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1

Structural Co-Evolution of Viruses and Cells in the Primordial World

Matti Jalasvuori, Jaana K. H. Bamford

Journal:

Origins of Life and Evolution of Biospheres

Year:

2008

Language:

english

File:

PDF, 412 KB

english, 2008

2

Identification of five novel tectiviruses in Bacillus strains: analysis of a highly variable region generating genetic diversity

Jalasvuori, Matti, Palmu, Saara, Gillis, Annika, Kokko, Hanna, Mahillon, Jacques, Bamford, Jaana K.H., Fornelos, Nadine

Journal:

Research in Microbiology

Year:

2013

Language:

english

File:

PDF, 1.22 MB

english, 2013

3

Black Queen Evolution and Trophic Interactions Determine Plasmid Survival after the Disruption of the Conjugation Network

Cairns, Johannes, Koskinen, Katariina, Penttinen, Reetta, Patinen, Tommi, Hartikainen, Anna, Jokela, Roosa, Ruusulehto, Liisa, Viitamäki, Sirja, Mattila, Sari, Hiltunen, Teppo, Jalasvuori, Matti, Zhax

Journal:

Year:

2018

Language:

english

File:

PDF, 1.88 MB

english, 2018

4

Closely Related Archaeal Haloarcula hispanica Icosahedral Viruses HHIV-2 and SH1 Have Nonhomologous Genes Encoding Host Recognition Functions

Jaakkola, S. T., Penttinen, R. K., Vilen, S. T., Jalasvuori, M., Ronnholm, G., Bamford, J. K. H., Bamford, D. H., Oksanen, H. M.

Journal:

Journal of Virology

Year:

2012

Language:

english

File:

PDF, 2.70 MB

english, 2012

5

Classification of prokaryotic genetic replicators: between selfishness and altruism

Jalasvuori, Matti, Koonin, Eugene V.

Journal:

Annals of the New York Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 382 KB

english, 2015

6

Conjugation is necessary for a bacterial plasmid to survive under protozoan predation

Cairns, Johannes, Jalasvuori, Matti, Ojala, Ville, Brockhurst, Michael, Hiltunen, Teppo

Journal:

Biology Letters

Year:

2016

Language:

english

File:

PDF, 323 KB

english, 2016

7

Dynamics of a Laterally Evolving Community of Ribozyme-Like Agents as Studied with a Rule-Based Computing System

Matti Jalasvuori, Maija P. Jalasvuori, Jaana K. H. Bamford

Journal:

Origins of Life and Evolution of Biospheres

Year:

2010

Language:

english

File:

PDF, 521 KB

english, 2010

8

The Closest Relatives of Icosahedral Viruses of Thermophilic Bacteria Are among Viruses and Plasmids of the Halophilic Archaea

Jalasvuori, M., Jaatinen, S. T., Laurinavicius, S., Ahola-Iivarinen, E., Kalkkinen, N., Bamford, D. H., Bamford, J. K. H.

Journal:

Journal of Virology

Year:

2009

Language:

english

File:

PDF, 2.71 MB

english, 2009

9

Sublethal streptomycin concentrations and lytic bacteriophage together promote resistance evolution

Cairns, Johannes, Becks, Lutz, Jalasvuori, Matti, Hiltunen, Teppo

Journal:

Philosophical Transactions Biological Sciences

Year:

2017

Language:

english

File:

PDF, 613 KB

english, 2017

10

On-Demand Isolation of Bacteriophages Against Drug-Resistant Bacteria for Personalized Phage Therapy

Mattila, Sari, Ruotsalainen, Pilvi, Jalasvuori, Matti

Journal:

Frontiers in Microbiology

Year:

2015

Language:

english

File:

PDF, 672 KB

english, 2015

11

Phage therapy

Örmälä, Anni-Maria, Jalasvuori, Matti

Journal:

Year:

2013

Language:

english

File:

PDF, 113 KB

english, 2013

12

High Temperature and Bacteriophages Can Indirectly Select for Bacterial Pathogenicity in Environmental Reservoirs

Friman, Ville-Petri, Hiltunen, Teppo, Jalasvuori, Matti, Lindstedt, Carita, Laanto, Elina, Örmälä, Anni-Maria, Laakso, Jouni, Mappes, Johanna, Bamford, Jaana K. H., Brockhurst, Michael

Journal:

Year:

2011

Language:

english

File:

PDF, 197 KB

english, 2011

13

Virus epidemics can lead to a population-wide spread of intragenomic parasites in a previously parasite-free asexual population

Jalasvuori, Matti, Lehtonen, Jussi

Journal:

Molecular Ecology

Year:

2014

Language:

english

File:

PDF, 557 KB

english, 2014

14

Evolutionary rescue of bacteria via horizontal gene transfer under a lethal β-lactam concentration

Ojala, Ville, Mattila, Sari, Hoikkala, Ville, Bamford, Jaana K.H., Jalasvuori, Matti

Journal:

Journal of Global Antimicrobial Resistance

Year:

2014

Language:

english

File:

PDF, 356 KB

english, 2014

15

Midbiotics: conjugative plasmids for genetic engineering of natural gut flora

Ruotsalainen, Pilvi, Penttinen, Reetta, Mattila, Sari, Jalasvuori, Matti

Journal:

Year:

2019

Language:

english

File:

PDF, 1.72 MB

english, 2019

16

Impact of orally administered lozenges withLactobacillus rhamnosusGG andBifidobacterium animalissubsp.lactisBB-12 on the number of salivary mutans streptococci, amount of plaque, gingival inflammation and the oral microbiome in healthy adults

Toiviainen, Aino, Jalasvuori, Heli, Lahti, Emilia, Gursoy, Ulvi, Salminen, Seppo, Fontana, Margherita, Flannagan, Susan, Eckert, George, Kokaras, Alexis, Paster, Bruce, Söderling, Eva

Journal:

Clinical Oral Investigations

Year:

2015

Language:

english

File:

PDF, 355 KB

english, 2015

17

Towards Controlled Synthesis of Water-Soluble Gold Nanoclusters: Synthesis and Analysis

Sokolowska, Karolina, Malola, Sami, Lahtinen, Manu, Saarnio, Ville, Permi, Perttu, Koskinen, Katariina, Jalasvuori, Matti, Häkkinen, Hannu, Lehtovaara, Lauri, Lahtinen, Tanja

Journal:

The Journal of Physical Chemistry C

Year:

2019

Language:

english

File:

PDF, 1.12 MB

english, 2019

18

Temperature-dependent mutational robustness can explain faster molecular evolution at warm temperatures, affecting speciation rate and global patterns of species diversity

Puurtinen, Mikael, Elo, Merja, Jalasvuori, Matti, Kahilainen, Aapo, Ketola, Tarmo, Kotiaho, Janne S., Mönkkönen, Mikko, Pentikäinen, Olli T.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.36 MB

english, 2015

19

What can evolutionary rescue tell us about the emergence of new resistant bacteria?

Jalasvuori, Matti, Penttinen, Reetta

Journal:

Future Microbiology

Year:

2017

Language:

english

File:

PDF, 2.08 MB

english, 2017

20

A Unique Group of Virus-Related, Genome-Integrating Elements Found Solely in the Bacterial Family Thermaceae and the Archaeal Family Halobacteriaceae

Jalasvuori, M., Pawlowski, A., Bamford, J. K. H.

Journal:

Journal of Bacteriology

Year:

2010

Language:

english

File:

PDF, 1.63 MB

english, 2010

21

Vehicles, Replicators, and Intercellular Movement of Genetic Information: Evolutionary Dissection of a Bacterial Cell

Jalasvuori, Matti

Journal:

International Journal of Evolutionary Biology

Year:

2012

Language:

english

File:

PDF, 359 KB

english, 2012

22

Dual-stressor selection alters eco-evolutionary dynamics in experimental communities

Hiltunen, Teppo, Cairns, Johannes, Frickel, Jens, Jalasvuori, Matti, Laakso, Jouni, Kaitala, Veijo, Künzel, Sven, Karakoc, Emre, Becks, Lutz

Journal:

Nature Ecology & Evolution

Year:

2018

Language:

english

File:

PDF, 1.77 MB

english, 2018

23

Targeting antibiotic resistant bacteria with phage reduces bacterial density in an insect host

Mikonranta, Lauri, Buckling, Angus, Jalasvuori, Matti, Raymond, Ben

Journal:

Biology Letters

Year:

2019

Language:

english

File:

PDF, 423 KB

english, 2019

24

Genomic evolution of bacterial populations under coselection by antibiotics and phage

Cairns, Johannes, Frickel, Jens, Jalasvuori, Matti, Hiltunen, Teppo, Becks, Lutz

Journal:

Molecular Ecology

Year:

2017

Language:

english

File:

PDF, 922 KB

english, 2017

25

Beta-Lactam Sensitive Bacteria Can Acquire ESBL-Resistance via Conjugation after Long-Term Exposure to Lethal Antibiotic Concentration

Ruotsalainen, Pilvi, Given, Cindy, Penttinen, Reetta, Jalasvuori, Matti

Journal:

Year:

2020

File:

PDF, 816 KB

2020

26

Conjugative ESBL plasmids differ in their potential to rescue susceptible bacteria via horizontal gene transfer in lethal antibiotic concentrations

Mattila, Sari, Ruotsalainen, Pilvi, Ojala, Ville, Tuononen, Timo, Hiltunen, Teppo, Jalasvuori, Matti

Journal:

The Journal of Antibiotics

Year:

2017

Language:

english

File:

PDF, 402 KB

english, 2017

27

Antitumor effect of oncolytic virus and paclitaxel encapsulated in extracellular vesicles for lung cancer treatment

Garofalo, M., Saari, H., Somersalo, P., Crescenti, D., Kuryk, L., Aksela, L., Capasso, C., Madetoja, M., Koskinen, K., Oksanen, T., Mäkitie, A., Jalasvuori, M., Cerullo, V., Ciana, P., Yliperttula, M.

Journal:

Journal of Controlled Release

Year:

2018

Language:

english

File:

PDF, 10.71 MB

english, 2018

28

Fight evolution with evolution: plasmid-dependent phages with a wide host range prevent the spread of antibiotic resistance

Ojala, Ville, Laitalainen, Jarkko, Jalasvuori, Matti

Journal:

Evolutionary Applications

Year:

2013

Language:

english

File:

PDF, 429 KB

english, 2013

29

Bacteriophage selection against a plasmid-encoded sex apparatus leads to the loss of antibiotic-resistance plasmids

Jalasvuori, M., Friman, V.-P., Nieminen, A., Bamford, J. K. H., Buckling, A.

Journal:

Biology Letters

Year:

2011

Language:

english

File:

PDF, 189 KB

english, 2011

30

Did the Ancient Crenarchaeal Viruses from the Dawn of Life Survive Exceptionally Well the Eons of Meteorite Bombardment?

Jalasvuori, Matti, Bamford, Jaana K.H.

Journal:

Year:

2009

Language:

english

File:

PDF, 1.27 MB

english, 2009

31

Gammasphaerolipovirus, a newly proposed bacteriophage genus, unifies viruses of halophilic archaea and thermophilic bacteria within the novel familySphaerolipoviridae

Pawlowski, Alice, Rissanen, Ilona, Bamford, Jaana K. H., Krupovic, Mart, Jalasvuori, Matti

Journal:

Archives of Virology

Year:

2014

Language:

english

File:

PDF, 1020 KB

english, 2014

32

Population-level consequences of risky dispersal

Shaw, Allison K., Jalasvuori, Matti, Kokko, Hanna

Journal:

Year:

2014

Language:

english

File:

PDF, 657 KB

english, 2014

33

Closely Related Archaeal Haloarcula hispanica Icosahedral Viruses HHIV-2 and SH1 Have Nonhomologous Genes Encoding Host Recognition Functions

Jaakkola, S. T., Penttinen, R. K., Vilen, S. T., Jalasvuori, M., Ronnholm, G., Bamford, J. K. H., Bamford, D. H., Oksanen, H. M.

Journal:

Journal of Virology

Year:

2012

Language:

english

File:

PDF, 59 KB

english, 2012

34

Probiotic Lactobacillus reuteri strains ATCC PTA 5289 and ATCC 55730 differ in their cariogenic properties in vitro

Heli Jalasvuori, Anna Haukioja, Jorma Tenovuo

Journal:

Archives of Oral Biology

Year:

2012

Language:

english

File:

PDF, 341 KB

english, 2012

35

On the astrobiological relevance of viruses in extraterrestrial ecosystems

Jalasvuori, Matti, Örmälä, Anni-Maria, Bamford, Jaana K.H.

Journal:

International Journal of Astrobiology

Year:

2009

Language:

english

File:

PDF, 313 KB

english, 2009

36

Extracellular vesicles provide a capsid-free vector for oncolytic adenoviral DNA delivery

Saari, Heikki, Turunen, Tiia, LÃµhmus, Andres, Turunen, Mikko, Jalasvuori, Matti, Butcher, Sarah J., YlÃ¤-Herttuala, Seppo, Viitala, Tapani, Cerullo, Vincenzo, Siljander, Pia R. M., Yliperttula, Marjo

Journal:

Journal of Extracellular Vesicles

Year:

2020

File:

PDF, 4.98 MB

2020

37

Molecular Characterization of a Variant of Bacillus anthracis-Specific Phage AP50 with Improved Bacteriolytic Activity

Sozhamannan, S., McKinstry, M., Lentz, S. M., Jalasvuori, M., McAfee, F., Smith, A., Dabbs, J., Ackermann, H.-W., Bamford, J. K. H., Mateczun, A., Read, T. D.

Journal:

Applied and Environmental Microbiology

Year:

2008

Language:

english

File:

PDF, 873 KB

english, 2008

38

Extending the hosts of Tectiviridae into four additional genera of Gram-positive bacteria and more diverse Bacillus species

Jalasvuori, Matti, Koskinen, Katariina

Journal:

Year:

2018

Language:

english

File:

PDF, 933 KB

english, 2018

39

Scoping the effectiveness and evolutionary obstacles in using plasmid-dependent phages to fight antibiotic resistance

Ojala, Ville, Mattila, Sari, Hoikkala, Ville, Bamford, Jaana KH, Hiltunen, Teppo, Jalasvuori, Matti

Journal:

Future Microbiology

Year:

2016

Language:

english

File:

PDF, 2.17 MB

english, 2016

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